FastQCFastQC Report
Wed 8 May 2024
EGAF00002481858

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481858
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67003657
Total Bases536 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGACGCCC2473102736.90996597394677No Hit
CTGACTGA1616456624.12490112293423No Hit
ACCGTATG1278149419.075815518546996No Hit
GATTAGAT1265787318.891316633657773No Hit
TGACGCCA881530.13156446072786743No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)