FastQCFastQC Report
Wed 8 May 2024
EGAF00002481863

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481863
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55067146
Total Bases440.5 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCAAAT1448799826.309694713432215No Hit
CTCGCGTA1342944224.387394255006427No Hit
AAATGTGC1340842224.349222674441855No Hit
TCTATCCG1284244123.321421088356388No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)