FastQCFastQC Report
Wed 8 May 2024
EGAF00002481864

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481864
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54715266
Total Bases437.7 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCAAAT1450881126.51693404908239No Hit
CTCGCGTA1344960624.581084920614295No Hit
AAATGTGC1339816124.487061800997186No Hit
TCTATCCG1283110523.450685591110897No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)