FastQCFastQC Report
Wed 8 May 2024
EGAF00002481869

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481869
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62534874
Total Bases500.2 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTCTA1725661827.595191124875377No Hit
ACTGCTCG1599185525.57269884320867No Hit
TGGTAAAC1578783825.24645368278826No Hit
GAAAGGGT1278418620.443290570954055No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)