FastQCFastQC Report
Wed 8 May 2024
EGAF00002481870

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481870
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63860961
Total Bases510.8 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTCTA1765669527.64865220239952No Hit
ACTGCTCG1629026025.508949043219065No Hit
TGGTAAAC1614090425.27507219943026No Hit
GAAAGGGT1306370120.456474183030224No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)