FastQCFastQC Report
Wed 8 May 2024
EGAF00002481876

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481876
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59363643
Total Bases474.9 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGATGCCG1686328228.406750576274437No Hit
CCCACAGT1673794428.19561461212884No Hit
TATGATTC1385379023.33716278160355No Hit
ATGCTGAA1132531519.07786387031537No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)