FastQCFastQC Report
Wed 8 May 2024
EGAF00002481891

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481891
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58888311
Total Bases471.1 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCTTCTT1621357427.532754335576037No Hit
GGTCGTAC1610247627.344095503095684No Hit
CTGACGCG1509035525.625382599273394No Hit
AAAGAAGA1063349218.057050405130486No Hit
TCCTTCTA826860.14041156656709003No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)