FastQCFastQC Report
Wed 8 May 2024
EGAF00002481892

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481892
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58489185
Total Bases467.9 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCTTCTT1608425727.499540299629754No Hit
GGTCGTAC1606829427.47224807457994No Hit
CTGACGCG1499867125.64349460502826No Hit
AAAGAAGA1051995117.986147353566302No Hit
TCCTTCTA816730.13963778089915255No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)