FastQCFastQC Report
Mon 13 May 2024
EGAF00002481895

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481895
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58888311
Total Bases5.9 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACCCATCAGGGCCTGAGCTCGCCCGTCACAAAGAGCTTCAACAGGGGAG804040.1365364341999892No Hit
GTCACCCATCAGGGCCTGAGCTCGCCCGTCACAAAGAGCTTCAACAGGGG684000.1161520832207261No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCATTGAGGCAGCCAGCG637700.10828974191499567Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CACAAACTCTACGCCTGCGAAGTCACCCATCAGGGCCTGAGCTCGCCCGT613020.10409875739176828No Hit
GGGAGAAGTGCCCCCACCTGCTCCTCAGTTCCAGCCTGACCCCCTCCCAT589880.10016928486877473No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)