FastQCFastQC Report
Wed 8 May 2024
EGAF00002481897

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481897
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67577869
Total Bases540.6 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCGAT2204664432.62405921678294No Hit
ACCCGACG1690978525.02266681419031No Hit
TGATATTC1546822522.889483241917556No Hit
GTGATCGA1186711317.560649922240078No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)