FastQCFastQC Report
Wed 8 May 2024
EGAF00002481898

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481898
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66845956
Total Bases534.7 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCGAT2168884532.4460091497532No Hit
ACCCGACG1663328024.8830011496881No Hit
TGATATTC1518767622.720411089640187No Hit
GTGATCGA1170283817.507174255986406No Hit
ACCCGACT1121470.16776931128040115No Hit
ACCCGACA723280.10820101069390048No Hit
CATGCGAG714220.10684565570428822No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)