FastQCFastQC Report
Wed 8 May 2024
EGAF00002481903

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481903
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences68243318
Total Bases545.9 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATTCGG2095416930.70508529494419No Hit
TGCGAACT1767340425.897632937484076No Hit
ATTACTTC1499246921.969138429054695No Hit
CAGCGGAA1324222719.404430189047957No Hit
GCATTCGA1061710.15557713650441204No Hit
CAGCGAAA736250.10788602043060098No Hit
ATTAATTC734420.10761786230851203No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)