FastQCFastQC Report
Wed 8 May 2024
EGAF00002481904

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481904
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67549077
Total Bases540.3 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATTCGG2057088030.45323624481205No Hit
TGCGAACT1740108325.760652510470276No Hit
ATTACTTC1473946121.820373652181804No Hit
CAGCGGAA1306968319.34842573792681No Hit
GCATTCGT1372970.20325518289465305No Hit
GCATTCGA1187350.17577590290389905No Hit
CAGCGAAA850420.12589661291744964No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)