FastQCFastQC Report
Wed 8 May 2024
EGAF00002481918

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481918
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54049430
Total Bases432.3 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCGTCA1471831827.23121779452623No Hit
GACTACGT1403020725.958103535966988No Hit
CTAGCGAG1293419723.930311568503125No Hit
TCTATATC1142990921.147140682149654No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)