FastQCFastQC Report
Wed 8 May 2024
EGAF00002481923

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481923
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences73898908
Total Bases591.1 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATTCGG2253686130.49687960206394No Hit
TGCGAACT2019412727.326692026355786No Hit
ATTACTTC1587890521.487333750588032No Hit
CAGCGGAA1431840919.37567061207454No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)