FastQCFastQC Report
Wed 8 May 2024
EGAF00002481929

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481929
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66904043
Total Bases535.2 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCGGCT2269052233.91502364064904No Hit
TCTGTTGG1824826627.27528140563942No Hit
GACTCAAA1402097320.956839633742312No Hit
AGAAACTC1105023616.516544448591844No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)