FastQCFastQC Report
Wed 8 May 2024
EGAF00002481930

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481930
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67198000
Total Bases537.5 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCGGCT2271951933.80981428018691No Hit
TCTGTTGG1822696127.124261138724364No Hit
GACTCAAA1402206620.866790678294No Hit
AGAAACTC1108771016.50005952558112No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)