FastQCFastQC Report
Wed 8 May 2024
EGAF00002481935

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481935
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59981455
Total Bases479.8 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCCCT1917988331.97635502506566No Hit
GGATGGGC1479439924.66495519323431No Hit
AATCAATG1297663321.634408501761087No Hit
CCGATTAA1223963820.40570372959442No Hit
TTCGCCCA746080.12438511203171046No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)