FastQCFastQC Report
Wed 8 May 2024
EGAF00002481936

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481936
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences60583912
Total Bases484.6 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCCCT1935910531.954200976655322No Hit
GGATGGGC1493635124.653988999587877No Hit
AATCAATG1311009321.639561671091823No Hit
CCGATTAA1237964220.433876901181293No Hit
TTCGCCCA806390.13310299275490828No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)