FastQCFastQC Report
Wed 8 May 2024
EGAF00002481941

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481941
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63911568
Total Bases511.2 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGCAGC1923015930.08869849664774No Hit
ACCCTCCT1719610126.90608529585755No Hit
CAATGGAG1395691021.837846319151488No Hit
TGGAATTA1296029420.278479163584283No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)