FastQCFastQC Report
Wed 8 May 2024
EGAF00002481942

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481942
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65507981
Total Bases524 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGCAGC1960596629.92912573507646No Hit
ACCCTCCT1754775726.7872047529598No Hit
CAATGGAG1421512821.69984142848182No Hit
TGGAATTA1321205020.16861121089963No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)