FastQCFastQC Report
Wed 8 May 2024
EGAF00002481947

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481947
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences68085586
Total Bases544.6 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGCCTTA1941399228.514099885987616No Hit
TAATGACC1789311426.28032605902812No Hit
GCCGAGAT1783616026.1966754607943No Hit
CGTATCGG1212775117.812508803258297No Hit
CGTATCGA837640.12302750834809588No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)