FastQCFastQC Report
Wed 8 May 2024
EGAF00002481948

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481948
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences69580182
Total Bases556.6 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGCCTTA1986600428.551238914551845No Hit
TAATGACC1831058426.31580354302609No Hit
GCCGAGAT1822430926.191809903572832No Hit
CGTATCGG1236596517.772251587384467No Hit
CGTATCGA858420.12337133582088072No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)