FastQCFastQC Report
Wed 8 May 2024
EGAF00002481990

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002481990
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61586828
Total Bases492.6 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAGTAGA1725664328.020022398295946No Hit
TTCCCGAC1718286627.9002289255748No Hit
AGTAGTCT1586572025.761547582869504No Hit
CAGTACTG1076039117.471903245284853No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)