FastQCFastQC Report
Wed 8 May 2024
EGAF00002482002

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002482002
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58549775
Total Bases468.3 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCACAGT1676021728.625587374161558No Hit
GGATGCCG1542122726.338661420987524No Hit
TATGATTC1372038623.433712597529198No Hit
ATGCTGAA1210267720.67074894822397No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)