FastQCFastQC Report
Wed 8 May 2024
EGAF00002482007

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002482007
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65650195
Total Bases525.2 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGATGAC2052980331.271503458595973No Hit
ACTTCATA1848535328.157346676578797No Hit
CTAGACCT1618635424.65545456491028No Hit
TGCCGTGG963186914.671500975739676No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)