FastQCFastQC Report
Wed 8 May 2024
EGAF00002482008

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002482008
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66386923
Total Bases531 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGATGAC2072074531.212088260213537No Hit
ACTTCATA1872869428.211420493159473No Hit
CTAGACCT1639781524.70036907720516No Hit
TGCCGTGG971402414.63243596935499No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)