FastQCFastQC Report
Wed 8 May 2024
EGAF00002482013

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002482013
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63847927
Total Bases510.7 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCCTCAT2402929537.635199965066995No Hit
CCAGGGCA2050922732.12199356135713No Hit
AATAATGG928039414.535153192992468No Hit
GTGTCATC910058614.253534026249593No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)