FastQCFastQC Report
Wed 8 May 2024
EGAF00002482014

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002482014
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64438983
Total Bases515.5 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCCTCAT2421638337.58033083793393No Hit
CCAGGGCA2065337732.05105983748999No Hit
AATAATGG934167614.496932702988188No Hit
GTGTCATC915351614.204935543442701No Hit
TGACTCAT817010.1267881586523487No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)