FastQCFastQC Report
Wed 8 May 2024
EGAF00002482019

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002482019
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63883804
Total Bases511 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGCGTG1771293027.72679285034435No Hit
GCGTACAC1751800927.421674827003102No Hit
CGACTTGA1653310725.879966383967997No Hit
TACAGACT1130838317.70148659275205No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)