FastQCFastQC Report
Wed 8 May 2024
EGAF00002482025

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002482025
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences69089446
Total Bases552.7 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCGTCAC2281236333.01859302794236No Hit
TGGTGTTT1704618524.672632343874923No Hit
GATCAGCA1616486223.397006251866603No Hit
ACAACAGG1206189817.458379967325254No Hit
TGGTGTTA1002600.145116230921869No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)