FastQCFastQC Report
Wed 8 May 2024
EGAF00002482031

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002482031
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62894410
Total Bases503.1 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATCCCG1927472030.64615758379799No Hit
TCTGTGAT1918336230.50090143146267No Hit
GAGCAAGA1767054828.09557796948886No Hit
CGCAGTTC58362049.279368389018993No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)