FastQCFastQC Report
Wed 8 May 2024
EGAF00002482032

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002482032
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62436258
Total Bases499.4 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATCCCG1903196330.482228771621774No Hit
TCTGTGAT1892617930.312801577570518No Hit
GAGCAAGA1744655627.942987870925894No Hit
CGCAGTTC57626949.229723536602723No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)