FastQCFastQC Report
Wed 8 May 2024
EGAF00002482038

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002482038
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63199455
Total Bases505.5 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAGGGCA2042929332.325109449124206No Hit
TGCCTCAT1712793727.101399845932217No Hit
AATAATGG1542728924.410477906811064No Hit
GTGTCATC904856414.31747156680386No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)