FastQCFastQC Report
Thu 9 May 2024
EGAF00002482055

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002482055
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47861297
Total Bases382.8 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGACGCCC1665967934.80824809239917No Hit
ACCGTATG1111333523.219878475086038No Hit
GATTAGAT989567320.67573095647617No Hit
CTGACTGA962981620.120257083714215No Hit
TGACGCCA635570.1327941447136295No Hit
CTGACTAA479420.10016861849773942No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)