FastQCFastQC Report
Thu 9 May 2024
EGAF00002482056

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002482056
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48464914
Total Bases387.7 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGACGCCC1682559534.71706356478833No Hit
ACCGTATG1119070123.09031436638885No Hit
GATTAGAT999068420.614261277756523No Hit
CTGACTGA972233920.06057206662948No Hit
TGACGCCA684120.14115778684761518No Hit
CTGACTAA504120.10401751667195777No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)