FastQCFastQC Report
Thu 9 May 2024
EGAF00002482061

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002482061
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50331343
Total Bases402.6 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCTGCGC1772804335.222670295128026No Hit
GAGGATCT1286782425.566224211422295No Hit
CTTATGAG1130343022.45803375443409No Hit
AGACCATA800029015.895244440427508No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)