FastQCFastQC Report
Thu 9 May 2024
EGAF00002482062

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002482062
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51142127
Total Bases409.1 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCTGCGC1792042135.04042958557434No Hit
GAGGATCT1303182925.4815936771656No Hit
CTTATGAG1144026022.36954282327757No Hit
AGACCATA810279415.843678148153673No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)