FastQCFastQC Report
Thu 9 May 2024
EGAF00002482067

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002482067
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48340642
Total Bases386.7 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCCTT1280958226.498576498011754No Hit
AGTGGAAC1203962924.905811139206634No Hit
CAGATGGG1170263524.20868758838577No Hit
TCACATCA1119806423.16490542264623Illumina PCR Primer Index 1 (100% over 8bp)

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)