FastQCFastQC Report
Fri 10 May 2024
EGAF00002482068

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002482068
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48669697
Total Bases389.3 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCCTT1295529426.618809646585635No Hit
AGTGGAAC1213838424.94033196878131No Hit
CAGATGGG1178060424.20521335894078No Hit
TCACATCA1131221323.242826023757658Illumina PCR Primer Index 1 (100% over 8bp)

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)