FastQCFastQC Report
Wed 8 May 2024
EGAF00002482073

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002482073
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67438242
Total Bases539.5 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATTCGG1818808726.969989816757085No Hit
TGCGAACT1752843225.991828197419498No Hit
CAGCGGAA1693587325.113159088577664No Hit
ATTACTTC1409715820.903804105688284No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)