FastQCFastQC Report
Wed 8 May 2024
EGAF00002482079

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002482079
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61967036
Total Bases495.7 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCTTCG1962378731.668106572016775No Hit
GTATGCTC1697721427.397169682280754No Hit
CGTGCAGA1422254122.95178520399136No Hit
AACAAGAT1023332616.514144713973412No Hit
TCGCTTCA674590.10886271855894479No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)