FastQCFastQC Report
Wed 8 May 2024
EGAF00002482080

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002482080
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62339811
Total Bases498.7 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCTTCG1976962531.71268036086924No Hit
GTATGCTC1706063927.36716510096574No Hit
CGTGCAGA1432184522.973834489167764No Hit
AACAAGAT1030012616.522549290372407No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)