FastQCFastQC Report
Fri 10 May 2024
EGAF00002482085

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002482085
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45360734
Total Bases362.8 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCAAGC1404713530.967609562931674No Hit
GCTACCTG1153395525.427178934097494No Hit
AAAGTGCT1127810224.8631382375779No Hit
TGCTGTAA820114518.079833099702487No Hit
GCTACCTA619340.13653659131706292No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)