FastQCFastQC Report
Thu 9 May 2024
EGAF00002482086

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002482086
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45679472
Total Bases365.4 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCAAGC1420425831.095495149330972No Hit
GCTACCTG1158467325.360785693845152No Hit
AAAGTGCT1125543724.640033054672784No Hit
TGCTGTAA824969818.059967943587438No Hit
GCTACCTA604930.13242928902505702No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)