FastQCFastQC Report
Wed 8 May 2024
EGAF00002482091

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002482091
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63139651
Total Bases505.1 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCCATCG2037158932.26433576580903No Hit
ATTGGCGT1530032324.232511199658042Illumina PCR Primer Index 6 (100% over 8bp)
TAGTTGTC1421637122.51575796641638No Hit
GCAACAAA1270988020.129791341418724No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)