FastQCFastQC Report
Wed 8 May 2024
EGAF00002482097

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002482097
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67235682
Total Bases537.8 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCTCCAA1845115327.44250143844752No Hit
CTACATCC1675338024.917394308575616No Hit
GATGTGGT1568149923.32317979610886No Hit
AGGAGATG1542033122.934743191866485No Hit
TCCTCAAA771660.11476941663207939No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)