FastQCFastQC Report
Wed 8 May 2024
EGAF00002482098

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002482098
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66847832
Total Bases534.7 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCTCCAA1839880727.52341616703441No Hit
CTACATCC1667583024.945954866569195No Hit
GATGTGGT1563287623.385763654982856No Hit
AGGAGATG1539293623.02682905258618No Hit
TCCTCAAA750130.1122145591797203No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)