FastQCFastQC Report
Wed 8 May 2024
EGAF00002482103

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002482103
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47876919
Total Bases383 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAGACCT1496275231.252537365656295No Hit
GAGATGAC1351111028.220508508494458No Hit
ACTTCATA1303564227.227403668143307No Hit
TGCCGTGG587376712.268473249082716No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)