FastQCFastQC Report
Fri 10 May 2024
EGAF00002482104

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002482104
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47720142
Total Bases381.7 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAGACCT1489937931.22241128284991No Hit
GAGATGAC1344685628.17857499250526No Hit
ACTTCATA1298159527.203596753756514No Hit
TGCCGTGG585451412.268433736010257No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)